It seems like everybody posts a question about "BB noise" at some stage (except me, I was too embarrassed so I read the other answers and took it to the genius rocket scientist committee in the Bike Barn workshop). In general the serious answer that people get on Vorb (as I understood it) is that noises from all over the frame can appear to come from the BB (as you rightly observed, standing up only eliminates the seat, actually puts more stress on the pedals, more torsion through the frame . . .). The stock fix is get the BB regreased and and tightened and see if that shuts it up. I think lots of times people found it really was the pedals making the noise, other times I think people found their "BB noise" came from causes as diverse as the seat rails and the headset.
Not that I know anything about fixing bikes, maybe this post will inspire an army of intelligent and informed mechanics to save you from my advice.
Somebody once told me that spraying teflon on your rotors stops the brakes from squeaking.


Mine's a twin bolt Thomson too
Could be something in that. I might put some insulation tape on the rails to see if that fixes the problem.
Charge micro one anyway as it's cheap on wiggle and matches my frame/saddle so we'll see.















